PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005007-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 613aa    MW: 66174.2 Da    PI: 6.7892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005007-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30334392259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  NNU_005007-RA 334 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 392
                    7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33318394IPR003657WRKY domain
SuperFamilySSF1182907.45E-28326394IPR003657WRKY domain
PROSITE profilePS5081129.792328394IPR003657WRKY domain
SMARTSM007743.2E-37333393IPR003657WRKY domain
PfamPF031065.8E-27335392IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDKGGGLTID SSEIGFFVTK PTAIKSSFLT SNHPKWKHDL MDFPVNLNCR DETASPVPSD  60
EKRIDEMDFF SDKNRLKDFD AKASTIDIKK EDSHGGVAPR LNLDVNTGLH LLTANNGSDQ  120
STVDDGVSPN SGDKKAKSEL AALQSELDRM NEENQRLKAM LSQVSNNYNA LQMHLVTLMQ  180
QQNRKAENTQ EHEISDGKLE GKKQDAGGGP MVPRQFMDLG PAATADTDEP SQSSSEGRSR  240
DRSGSPHNNA VEVVSKEYRQ QKNNSSNEIV PFDQDKGDFG EGRGIGREES PNQGWAANKI  300
PKLNPSKNAD QSTEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT  360
MAAGCPVRKQ VQRCAEDRSI LITTYEGNHN HPLPPAAMAM ASTTSAAACM LLSGSMSSAD  420
GLINSNFLTR TLLPCSSSMA TISASAPFPT VTLDLTHNPN PLQFQRPPTQ FHVPFPNQPQ  480
TFPSQPAPPL AQVFGQTLYN QSKFSGLQIS QDVEPAQFVN QPPPPQLHQA QQTSFADTVS  540
AATAAITADP NFTAALAAAI TSIIGGGVRP TNNSNGNDNS NNNNAANNSS GNTTTSNNNS  600
NNNKLSSSNF AGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22320396176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252466.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-142WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A061GGS50.0A0A061GGS5_THECC; WRKY family transcription factor
STRINGVIT_12s0059g00880.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-120WRKY DNA-binding protein 31